中国畜牧兽医 ›› 2025, Vol. 52 ›› Issue (9): 4427-4439.doi: 10.16431/j.cnki.1671-7236.2025.09.038

• 基础兽医 • 上一篇    

UPLC-Q-TOF-MS联合网络药理学和分子动力学模拟探讨四黄止痢颗粒治疗畜禽腹泻的作用机制

廖洪涛1, 温润2, 闫普普1, 黄永熙1, 刘满1, 朱君1, 程海山1, 巩一诺1, 彭杨芸1, 覃美林1, 李蓉1, 苏应兵1, 郭利伟1   

  1. 1. 长江大学动物科学技术学院, 荆州 434025;
    2. 竹山县农业农村局, 十堰 442200
  • 收稿日期:2025-04-12 发布日期:2025-08-29
  • 通讯作者: 苏应兵, 郭利伟 E-mail:1960280268@qq.com;guolw@yangtzeu.edu.cn
  • 作者简介:廖洪涛,E-mail:1358521471@qq.com。
  • 基金资助:
    2024年湖北省科技计划项目(2024EBA028);湿地生态与农业利用教育部工程研究中心开放基金项目(KFT202306)

Exploring of Mechanism of Action of Sihuang Zhili Granules in Treatment of Diarrhea in Livestock and Poultry by UPLC-Q-TOF-MS Combined with Network Pharmacology and Molecular Dynamics Simulation

LIAO Hongtao1, WEN Run2, YAN Pupu1, HUANG Yongxi1, LIU Man1, ZHU Jun1, CHENG Haishan1, GONG Yinuo1, PENG Yangyun1, QIN Meilin1, LI Rong1, SU Yingbing1, GUO Liwei1   

  1. 1. College of Animal Science and Technology, Yangtze University, Jingzhou 434025, China;
    2. Zhushan County Bureau of Agriculture and Rural Affairs, Shiyan 442200, China
  • Received:2025-04-12 Published:2025-08-29

摘要: 【目的】 系统解析四黄止痢颗粒干预畜禽腹泻性疾病的药理机制,为优化临床腹泻治疗方案提供理论依据。【方法】 运用UPLC-Q-TOF-MS技术分析四黄止痢颗粒的主要活性成分;借助SwissTargetPrediction数据库筛选活性成分并预测其作用靶点。通过 GeneCards和OMIM 疾病靶点数据库筛选与畜禽腹泻疾病的相关靶点。基于Cytoscape 3.10.3软件构建活性成分-靶点网络图。将四黄止痢颗粒作用靶点与腹泻疾病相关靶点取交集并绘制韦恩图。再次运用Cytoscape 3.10.3软件构建蛋白-蛋白互作网络,结合DAVID数据库对交集基因进行GO功能注释和 KEGG通路富集分析。采用AutoDock Vina实施分子对接,验证关键成分与核心靶点的结合活性,并基于Gromacs 2022软件开展100 ns分子动力学模拟。【结果】 通过UPLC-Q-TOF-MS鉴定出88个活性成分,经文献验证和SwissTargetPrediction数据库分析,共筛选得到16个四黄治痢颗粒关键成分。数据库分析揭示,该药物存在289个潜在作用靶点,4 567个畜禽腹泻相关靶点,二者存在201个交集靶点。GO功能注释在生物过程上主要与蛋白质磷酸化、凋亡过程的负调节、对外源性刺激的反应等相关;在细胞组分上主要与神经元细胞体、质膜、细胞质等相关;在分子功能上主要与蛋白结合、ATP 结合、含蛋白质的复合物结合等相关。KEGG 通路富集分析主要涉及磷脂酰肌醇信号系统、内质网中的蛋白质加工、酪氨酸代谢、PI3K-Akt 信号通路、FoxO 信号通路、Ras 信号通路、VEGF 信号通路等。分子对接结果显示,排名前十的核心靶点与四黄止痢颗粒6个主要活性成分的结合能均<-5 kJ/mol,表明对接效果良好。其中,金合欢素与热休克蛋白(7D1V)结合能最低,为-9.4 kJ/mol;100 ns分子动力学模拟进一步证实,金合欢素与7D1V具有良好的结合稳定性和活性。【结论】 预测结果显示,四黄止痢颗粒通过去甲汉黄芩素、黄芩素、山柰酚、5,7,2',6'-四羟基黄酮、金合欢素、千层纸素A等关键活性成分,作用于肿瘤坏死因子(TNF)、热休克蛋白90α家族A类成员1(HSP90AA1)、雷帕霉素靶蛋白(mTOR)、雌激素受体1(ESR1)等核心靶点,通过酪氨酸代谢、PI3K-Akt 信号通路、FoxO 信号通路、磷脂酰肌醇信号系统等途径,发挥治疗畜禽腹泻的作用。

关键词: 四黄止痢颗粒; 畜禽腹泻; UPLC-Q-TOF-MS; 网络药理学; 分子动力学模拟

Abstract: 【Objective】 This study was conducted to systematically investigate the pharmacological mechanisms of Sihuang Zhili granules against diarrheal diseases in livestock and poultry,and provide a theoretical basis for optimizing clinical diarrhea management strategies. 【Method】 The main active ingredients of Sihuang Zhili granules were analyzed using UPLC-Q-TOF-MS technology.Active ingredients were screened and their potential targets were predicted via SwissTargetPrediction database.Disease targets related to livestock and poultry diarrhea were identified through GeneCards and OMIM databases.An active component-target network was constructed using Cytoscape 3.10.3 software.The intersection between Sihuang ZhiLi granules’ targets and diarrhea-related targets was identified and visualized using a Venn diagram.A protein-protein interaction (PPI) network was subsequently built using Cytoscape 3.10.3. GO functional annotation and KEGG pathway analysis of intersection genes was performed using DAVID database.Finally,molecular docking was executed with AutoDock Vina to validate the binding activity between key components and core targets,followed by 100 ns molecular dynamics simulations conducted with Gromacs 2022 software. 【Result】 Through UPLC-Q-TOF-MS, 88 active ingredients were identified in Sihuang Zhili granules. Subsequently, 16 key components were screened out based on literature validation and analysis using SwissTargetPrediction database. The database analysis revealed that there were 289 potential targets for the drug,4 567 targets related to livestock and poultry diarrhea,and 201 intersecting targets.In terms of biological process,GO functional annotation was mainly related to protein phosphorylation,negative regulation of apoptosis,and response to exogenous stimuli.In terms of cell component,it was mainly related to neuronal cell body,plasma membrane,cytoplasm,etc.In terms of molecular function,it was mainly related to protein binding,ATP binding,and protein-containing complex binding.KEGG enrichment analysis mainly involved phosphatidylinositol signaling system,protein processing in endoplasmic reticulum,tyrosine metabolism,PI3K-Akt signaling pathway,FoxO signaling pathway,Ras signaling pathway,VEGF signaling pathway,etc.The molecular docking results showed that the binding energy of the top 10 core targets and the 6 main active ingredients of Sihuang Zhili granules was less than -5 kJ/mol,indicating that the docking effect was good.Among them,acacetin had the lowest binding energy to heat shock protein (7D1V),which was -9.4 kJ/mol.100 ns molecular dynamics simulation further confirmed that acacetin had good binding stability and activity with 7D1V. 【Conclusion】 The prediction results showed that Sihuang Zhili granules acted on tumor necrosis factor (TNF),heat shock protein 90α family class A member 1 (HSP90AA1),rapamycin target protein (mTOR),estrogen receptor 1 (ESR1) and other core targets through key active ingredients such as norwogonin,wogonin,kaempferol,5,7,2',6'-tetrahydroxyflavone,acacetin,and oroxylin A,and other core targets,through tyrosine metabolism,PI3K-Akt signaling pathway,FoxO signaling pathway,phosphatidylinositol signaling system and other pathways played a role in the treatment of livestock and poultry diarrhea.

Key words: Sihuang Zhili granules; livestock and poultry diarrhea; UPLC-Q-TOF-MS; network pharmacology; molecular dynamics simulation

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