China Animal Husbandry & Veterinary Medicine ›› 2021, Vol. 48 ›› Issue (1): 235-247.doi: 10.16431/j.cnki.1671-7236.2021.01.026
• Genetics and Breeding • Previous Articles Next Articles
SHANG Fangzheng1, HAN Wenjing1, WU Zhihong1, HAI Erhan1, MA Rong1, ZHANG Yanjun1, LI Jinquan2,3,4
Received:
2020-07-04
Online:
2021-01-20
Published:
2021-01-15
CLC Number:
SHANG Fangzheng, HAN Wenjing, WU Zhihong, HAI Erhan, MA Rong, ZHANG Yanjun, LI Jinquan. Research Advance on Application of Non-coding RNA in Livestock and Poultry[J]. China Animal Husbandry & Veterinary Medicine, 2021, 48(1): 235-247.
[1] ZHANG P,WU W Y,CHEN Q,et al.Non-coding RNAs and their integrated networks[J].Journal of Integrative Bioinform,2019,13(10):2019-2027. [2] CARNINCI P,KASUKAWA T,KATAYAMA S.The transcriptional landscape of the mammalian genome[J].Science,2005,309(5740):1559-1563. [3] DJEBALI S,DAVIS C A,MERKEL A,et al.Landscape of transcription in human cells[J].Nature,2012,489(7414):101-108. [4] GUTTMAN M,AMIT I,GARBER M,et al.Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals[J].Nature,2009,458(7235):223-227. [5] PAVET V,PORTAL M M,MOULIN J C,et al.Towards novel paradigms for cancer therapy[J].Oncogene,2011,30(1):1-20. [6] WEI G H,WANG X.lncRNA MEG3 inhibit proliferation and metastasis of gastric cancer via p53 signaling pathway[J].European Review for Medical and Pharmacological Sciences,2017,21(17):3850-3856. [7] IACONA J R,MONTELEONE N J,LEMENZE A D,et al.Transcriptomic studies provide insights into the tumor suppressive role of miR-146a-5p in non-small cell lung cancer (NSCLC) cells[J].RNA Biology,2019,16(12):1721-1732. [8] MA M L,XU H X,LIU G,et al.Metabolism-induced tumor activator 1(MITA1),an energy stress-inducible long non-coding RNA,promotes hepatocellular carcinoma metastasis[J].Hepatology,2019,6(10):30602. [9] ZHANG G L,LI H X,SUN R M,et al.Long non-coding RNA ZEB2-AS1 promotes the proliferation,metastasis and epithelial mesenchymal transition in triple-negative breast cancer by epigenetically activating ZEB2[J].Journal of Cellular and Molecular Medicine,2019,23(5):3271-3279. [10] LI H,YANG J M,JIANG R,et al.Long non-coding RNA profiling reveals an abundant MDNCR that promotes differentiation of myoblasts by sponging miR-133a[J].Molecular Therapy Nucleic Acids,2018,12:610-625. [11] YU L F,TAI L N,ZHANG L,et al.Comparative analyses of long non-coding RNA in lean and obese pig[J].Oncotarget,2017,8(25):41440-41450. [12] YANG H Y,YANG H,SHI G Q,et al.Expression profile analysis of microRNAs during hair follicle development in the sheep foetus[J].Bioscience,Biotechnology,and Biochemistry,2019,83(6):1045-1061. [13] CECH T R,STEITZ J A.The noncoding RNA revolution-trashing old rules to forge new ones[J].Cell,2014,157(1):77-94. [14] PESCHANSKT V J,WAHLESTEDT C.Non-coding RNAs as direct and indirect modulators of epigenetic regulation[J].Epigenetics,2014,9(1):3-12. [15] PONJAVIC J,PONTING C P,LUNTER G.Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs[J].Genome Research,2007,17(5):556-565. [16] CERUTTI P,HOLT J W,MILLER N.Detection and determination of 5,6-dihydrouridine and 4-thiouridine in transfer ribonucleic acid from different sources[J].Journal of Molecular Biology,1968,34(3):505-518. [17] ZIEVE G,PENMAN S.Small RNA species of the HeLa cell:Metabolism and subcellular localization[J].Cell,1976,8(1):19-31. [18] CHEN Q,MENG X W,LIAO Q,et al.Versatile interactions and bioinformatics analysis of noncoding RNAs[J].Brief Bioinform,2018,20(5):1781-1794. [19] TAFT R J,GLAZOV E A,LASSMANN T,et al.Small RNAs derived from snoRNAs[J].RNA,2009,15(7):1233-1240. [20] ONO M,SCOTT M S,YAMADA K,et al.Identification of human miRNA precursors that resemble box C/D snoRNAs[J].Nucleic Acids Research,2011,39(9):3879-3891. [21] HE X,CHEN X X,ZHANG X,et al.A lncRNA (GAS5)/SnoRNA-derived piRNA induces activation of TRAIL gene by site-specifically recruiting MLL/COMPASS-like complexes[J].Nucleic Acids Research,2015,43(7):3712-3725. [22] SCHAEFER M,POLLEX T,HANNA K,et al.RNA methylation by DNMT2 protects transfer RNAs against stress-induced cleavage[J].Genes Development,2010,24(15):1590-1595. [23] VENKATESH T,SURESH P S,TSUTSUMI R.tRFs:miRNAs in disguise[J].Gene,2016,579(2):133-138. [24] WILUSE J E,SUNWOO H,SPECTOR D L.Long noncoding RNAs:Functional surprises from the RNA world[J].Genes Development,2009,23(13):1494-1504. [25] LAGOS Q M,RAUHUT R,LENDECKEL W,et al.Identification of novel genes coding for small expressed RNAs[J].Science,2001,294(5543):853-858. [26] MCAUE A D,SLOTKIN R K.Transposable element small RNAs as regulators of gene expression[J].Trends in Genetics,2012,28(12):616-623. [27] FABIAN M R,SONENBERG N,FILIPOWICZ W.Regulation of mRNA translation and stability by microRNAs[J].Annual Review of Biochemistry,2010,79:351-379. [28] GARZON R,CALIN G A,CROCEC M.microRNAs in cancer[J].Annual Review of Medicine,2009,60:167-179. [29] SUN W,LI Y S J,HUANG H D,et al.microRNA:A master regulator of cellular processes for bioengineering systems[J].Annual Review of Biomedical Engineering,2010,12:1-27. [30] 李明勋.长链非编码RNA ADNCR通过竞争性结合miR-204抑制牛脂肪细胞分化[D].杨凌:西北农林科技大学,2016. LI M X.Long chain non-coding RNA ADNCR inhibits bovine adipocyte differentiation through competitive binding with miR-204[D].Yangling:Northwestern A&F University,2016.(in Chinese) [31] MA L N,VLADIMIR B B,ZHANG Z.On the classification of long non-coding RNAs[J].RNA Biology,2013,10(6):925-933. [32] CHEN L L,YANG L.Regulation of circRNA biogenesis[J].RNA Biology,2015,12(4):381-388. [33] RONG D,SUN H,LI Z,et al.An emerging function of circRNA-miRNAs-mRNA axis in human diseases[J].Oncotarget,2017,8(42):73271-73281. [34] SALMENA L,POLISENO L,TAY Y,et al.A ceRNA hypothesis:The rosetta stone of a hidden RNA language?[J].Cell,2011,146(3):353-358. [35] CESANA M,CACCHIARELLI D,LEGNINI I,et al.A long non-coding RNA controls muscle differentiation by functioning as a competing endogenous RNA[J].Cell,2011,147(2):358-369. [36] GAO J,YIN X B,YU X,et al.Long non-coding RNA LINC00488 functions as a ceRNA to regulate hepatocellular carcinoma cell growth and angiogenesis through miR-330-5[J].Digestive and Liver Disease,2019,51(7):1050-1059. [37] LIU Q,ZHANG X,HU X Q,et al.Circular RNA related to the chondrocyte ECM regulates MMP13 expression by functioning as a MiR-136 ‘Sponge’ in human cartilage degradation[J].Scientific Reports,2016,6:22572. [38] XIE H J,REN X L,XIN S N,et al.Emerging roles of circRNA_001569 targeting miR-145 in the proliferation and invasion of colorectal cancer[J].Oncotarget,2016,7(18):26680-26691. [39] SUN J,XIE M,HUANG Z,et al.Integrated analysis of non-coding RNA and mRNA expression profiles of 2 pig breeds differing in muscle traits[J].Journal of Animal Science,2017,95(3):1092-1103. [40] WANG J,REN Q L,HUA L S,et al.Comprehensive analysis of differentially expressed mRNA,lncRNA and circRNA and their ceRNA networks in the longissimus dorsi muscle of two different pig breeds[J].International Journal of Molecular Science,2019,20(5):1107. [41] LIU X,LIU K Q,SHAN B S,et al.A genome-wide landscape of mRNAs,lncRNAs,and circRNAs during subcutaneous adipogenesis in pigs[J].Journal of Animal Science and Biotechnology,2018,9:76. [42] SHEN L Y,GAN M L,TANG Q Z,et al.Comprehensive analysis of lncRNAs and circRNAs reveals the metabolic specialization in oxidative and glycolytic skeletal muscles[J].International Journal of Molecular Science,2019,20(12):2855. [43] LI A,HUANG W L,ZHANG X X,et al.Identification and characterization of circRNAs of two pig breeds as a new biomarker in metabolism-related diseases[J].Cellular Physiology and Biochemistry,2018,47(6):2458-2470. [44] WANG Y Y,HU T,WU L H,et al.Identification of non-coding and coding RNAs in porcine endometrium[J].Genomics,2017,109(1):43-50. [45] CHEN J N,ZOU Q,LV D J,et al.Comprehensive transcriptional profiling of aging porcine liver[J].PeerJ,2019,17(7):e6949. [46] VENO M T,HANSEN T B,VENO S T,et al.Spatio-temporal regulation of circular RNA expression during porcine embryonic brain development[J].Genome Biology,2015,16:245. [47] XI Y,LIU H J,ZHAO Y Q,et al.Comparative analyses of longissimus muscle miRNAomes reveal microRNAs associated with differential regulation of muscle fiber development between Tongcheng and Yorkshire pigs[J].PLoS One,2018,13(7):e0200445. [48] HONG L J,LIU R Z,QIAO X W,et al.Differential microRNA expression in porcine endometrium involved in remodeling and angiogenesis that contributes to embryonic implantation[J].Frontiers in Genetics, 2019,10:661. [49] DILZER A,PARK Y.Implication of conjugated linoleic acid (CLA) in human health[J].Critical Reviews Food Science and Nutrition,2012,52(6):488-513. [50] VILADOMIU M,HONTECILLAS R,BASSAGANYA-RIERA J.Modulation of inflammation and immunity by dietary conjugated linoleic acid[J].European Journal Pharmacol,2016,785:87-95. [51] LI H,WEI X F,YANG J M,et al.circFGFR4 promotes differentiation of myoblasts via binding miR-107 to relieve its inhibition of Wnt3a[J].Molecular Therapy Nucleic Acids,2018,11:272-283. [52] WEI X F,LI H,YANG J M,et al.Circular RNA profiling reveals an abundant circLMO7 that regulates myoblasts differentiation and survival by sponging miR-378a-3p[J].Cell Death Disease,2017,8(10):541. [53] LIU M,LI B,PENG W W,et al.lncRNA-MEG3 promotes bovine myoblast differentiation by sponging miR-135[J].Journal of Cellular Physiology,2019,234(10):18361-18370. [54] CHEN M M,LI X,ZHANG X J,et al.A novel long non-coding RNA,lncKBTBD10,involved in bovine skeletal muscle myogenesis[J].In Vitro Cellular Developmental Biology Animal,2019,55(1):25-35. [55] SUN H Z,CHEN Y H,GUAN L L.microRNA expression profiles across blood and different tissues in cattle[J].Scientific Data,2019,6:190013. [56] CHOI J Y,SHIN D,LEE H J,et al.Comparison of long non-coding RNA between muscles and adipose tissues in Hanwoo beef cattle[J].Animal Cells and Systerms,2018,23(1):50-58. [57] ZHENG X,NING C,ZHAO P,et al.Integrated analysis of long non-coding RNA and mRNA expression profiles reveals the potential role of long non-coding RNA in different bovine lactation stages[J].Journal of Dairy Science,2018,101(12):11061-11073. [58] GUPTA P,PETER S,JUNG M,et al.Analysis of long non-coding RNA and mRNA expression in bovine macrophages brings up novel aspects of Mycobacterium avium subspecies paratuberculosis infections[J].Scientific Reports,2019,9(1):1571. [59] WANG S H,GE W,LUO Z X,et al.Integrated analysis of coding genes and non-coding RNAs during hair follicle cycle of cashmere goat (Capra hircus)[J].BMC Genomics,2017,18(1):767. [60] ZHOU G X,KANG D J,MA S,et al.Integrative analysis reveals ncRNA-mediated molecular regulatory network driving secondary hair follicle regression in cashmere goats[J].BMC Genomics,2018,19(1):222. [61] ZHENG Y Y,WANG Z Y,ZHU Y B,et al.lncRNA-000133 from secondary hair follicle of cashmere goat:Identification,regulatory network and its effects on inductive property of dermal papilla cells[J].Animal Biotechnology,2019,11:1-13. [62] JIAO Q,WANGY R,ZGAO J Y,et al.Identification and molecular analysis of cashmere goat lncRNAs reveal their integrated regulatory network and potential roles in secondary hair follicle[J].Animal Biotechnology,2020,688:182-192. [63] ZHANG L,LIU X R,CHE S C,et al.circRNA-9119 regulates the expression of prostaglandin-endoperoxide synthase 2(PTGS2) by sponging miR-26a in the endometrial epithelial cells of dairy goat[J].Reproduction,Fertility and Development,2018,30(12):1759-1769. [64] LIU X R,ZHANG L,LIU Y X,et al.circ-8073 regulates CEP55 by sponging miR-449a to promote caprine endometrial epithelial cells proliferation via the PI3K/AKT/mTOR pathway[J].Biochimica Biophysica Acta Molecular Cell Research,2018,1865(8):1130-1147. [65] REN C F,DENG M T,FAN Y X,et al.Genome-wide analysis reveals extensive changes in lncRNAs during skeletal muscle development in Hu sheep[J].Genes,2017,8(8):191. [66] WANG J,TAN J Y,QI Q,et al.miR-487b-3p suppresses the proliferation and differentiation of myoblasts by targeting IRS1 in skeletal muscle myogenesis[J].International Journal of Biological Sciences, 2018,14(7):760-774. [67] LI G,FU S Y,CHEN Y,et al.microRNA-15a regulates the differentiation of intramuscular preadipocytes by targeting ACAA1,ACOX1 and SCP2 in chickens[J].International Journal of Molecular Sciences,2019,20(16):4063. [68] SHEN M,LI T,ZHANG G,et al.Dynamic expression and functional analysis of circRNA in granulosa cells during follicular development in chicken[J].BMC Genomics,2019,20(1):96. [69] ZHANG H,MEHMOOD K,JIANG X,et al.Identification of differentially expressed miRNAs profile in a thiram-induced tibial dyschondroplasia[J].Ecotoxicol and Environmental Safety, 2019,175:83-89. [70] GAO S,JIANG H,SUN J,et al.Integrated analysis of miRNA and mRNA expression profiles in spleen of specific pathogen-free chicken infected with avian reticuloendotheliosis virus strain SNV[J].International Journal of Molecular Sciences,2019,20(5):1041. [71] SHAO F,WANG X,YU J,et al.Expression of miR-33 from an SREBP2 intron inhibits the expression of the fatty acid oxidation-regulatory genes CROT and HADHB in chicken liver[J].British Poultry Science,2019,60(2):115-124. [72] HAN B,HE Y H,ZHANG L,et al.Long intergenic non-coding RNA GALMD3 in chicken Marek's disease[J].Scientific Reports,2017,7(1):10294. [73] CHEN F,ZHANG H,LI J J,et al.Identification of differentially expressed miRNAs in the fatty liver of Landes goose (Anser anser)[J].Scientific Reports,2017,7(1):16296. [74] ZHANG J,WANG Q,ZHAO X,et al.microRNA-122 targets genes related to goose fatty liver[J].Journal of Poultry Science,2018,97(2):643-649. [75] ZHENG Y,JIANG S B,ZHANG Y H,et al.Detection of miR-33 expression and the verification of its target genes in the fatty liver of geese[J].International Journal of Molecular Science,2015,16(6):12737-12752. [76] REN J D,DU X,ZENG T,et al.Divergently expressed gene identification and interaction pre-diction of long non-coding RNA and mRNA involved in duck reproduction[J].Animal Reproduction Science,2017,185:8-17. [77] LU C,XING Y,CAI H,et al.Identification and analysis of long non-coding RNAs in response to H5N1 influenza viruses in duck (Anas platyrhynchos)[J].BMC Genomics,2019,20(1):36. |
[1] | LAO Yingdi, HOU Caiqin, LI Xin, GUO Yiwen, HU Debao, GUO Hong, ZHANG Linlin, DING Xiangbin. Research Progress on Intramuscular Fat Deposition Related Genes in Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(6): 2603-2611. |
[2] | LIN Yanzhi, DENG Dun, MA Xianyong, YU Miao, LU Yusheng, SONG Min, JIANG Qingyan. Advances in Production and in vitro Degradation of Skatole in Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(6): 2650-2661. |
[3] | ZHANG Yuying, XING Jiabao, ZHANG Yichao, ZHANG Hang, ZHANG Junkai, ZHAI Yajun, ZHAO Jinxin, WU Hua. Research Progress on Phage Against Klebsiella pneumoniae Infection and Clinical Application [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(6): 2955-2964. |
[4] | CAI Yucheng, WU Guanyuan, YANG Haidong, FANG Yinuo, CHEN Zhisheng, ZHAN Xiaoshu. Mechanisms and Current Applications of Probiotics in Animal Health Management [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(5): 2101-2114. |
[5] | TANG Huangyao, ZHANG Wei, WEI Hao, WANG Feiying, LIAO Xiaocui, ZHANG Zhenyu. Research Progress on Biological Functions of Soy Isoflavones and Its Application in Animal Production [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(5): 2157-2165. |
[6] | ZHU Bin, ZHOU Xingyou, WUJunquan, CHEN Huiying, ZHUJianfeng, QIJiaojiao, HU Wenfeng, YANG Meiyan. Phage Therapy in Mycoplasma Disease Management:Advances in Prevention and Treatment Strategies for Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(4): 1763-1775. |
[7] | ZHANG Lingyu, ZHANG Jiaxi, WEI Yuxuan, WU Qiong. Research Progress on Hazards of Bisphenol A and Its Substitutes to Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(3): 1317-1327. |
[8] | YUAN Qing, MENG Ru, LI Guoping, ZHANG Rui. Advances in Application of CRISPR-Cas Technology in the Detection of Animal Pathogenic Microorganisms [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(2): 545-553. |
[9] | YANG Xinshuo, CHANG Danyi, XU Dandan, ZHANG Haihua, MA Qiugang, HUANG Shimeng. Advances in the Impact of Tryptophan and Its Bacterial Metabolites on Intestinal Barrier Function and Growth Performance in Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(2): 636-644. |
[10] | ZHANG Yao, ZHU Liyang, YANG Ying, HOU Jingyan, HAN Taoze, WANG Kailong, XU Yaxi, SHENG Xihui. Research Progress on Inosine Monophosphate in Livestock and Poultry Muscle [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(2): 686-697. |
[11] | YAN Tingting, ZHAO Jingwen, ZHAO Shengguo, WU Huiguang. Advance in Bacteriophage-derived Antibacterial Proteins and Their Synergistic Mechanisms [J]. China Animal Husbandry & Veterinary Medicine, 2025, 52(1): 322-330. |
[12] | XIE Xinfeng, WANG Ziyi, ZHONG Ziqi, PAN Deyou, NI Shiheng, XIAO Qian. Advances in Extended Methods of Genome-Wide Association Studies and Their Applications in Livestock and Poultry [J]. China Animal Husbandry & Veterinary Medicine, 2024, 51(4): 1382-1389. |
[13] | CAI Cimei, MA Chong, ZHU Jianfeng, PANG Xu, QI Jiaojiao, LI Xueling, YANG Meiyan, HU Wenfeng, HU Bin. Advance of Applications of Hermetia illucens L.Larvae as Feedstock in Pig Production [J]. China Animal Husbandry & Veterinary Medicine, 2024, 51(4): 1500-1510. |
[14] | PENG Cong, LI Jing, TANG Xiaopeng, WANG Zixuan, WU Yuhong, ZHU Yiping. Research Progress on the Application of Platelet-rich Plasma in the Equine Locomotor System Injuries [J]. China Animal Husbandry & Veterinary Medicine, 2024, 51(4): 1784-1791. |
[15] | JIANG Huiqiong, LIU Yating, CHEN Qinghua. Physiological Function of Superoxide Dismutase and Its Application Prospect in Animal Production [J]. China Animal Husbandry & Veterinary Medicine, 2024, 51(3): 945-954. |
Viewed | ||||||
Full text |
|
|||||
Abstract |
|
|||||